# Generated by roxygen2: do not edit by hand

export(CharacterNumbers)
export(ColnamesToFactors)
export(DATAnormalization)
export(DATAplotBoxplotSamples)
export(DATAplotExpression1Gene)
export(DATAplotExpressionGenes)
export(DATAprepSE)
export(DEanalysisGlobal)
export(DEanalysisGroup)
export(DEanalysisSubData)
export(DEanalysisTime)
export(DEanalysisTimeAndGroup)
export(DEplotAlluvial)
export(DEplotBarplot)
export(DEplotBarplotFacetGrid)
export(DEplotBarplotTime)
export(DEplotHeatmaps)
export(DEplotVennBarplotGroup)
export(DEplotVennBarplotTime)
export(DEplotVolcanoMA)
export(DEresultGroup)
export(DEresultGroupPerTime)
export(GSEAQuickAnalysis)
export(GSEApreprocessing)
export(HCPCanalysis)
export(MFUZZanalysis)
export(MFUZZclustersNumber)
export(PCAanalysis)
export(PCAgraphics)
export(PCApreprocessing)
export(PCArealization)
export(RawCountsSimulation)
importFrom(Biobase,
  ExpressionSet,
  assayData
)
importFrom(ComplexHeatmap,
  Heatmap,
  HeatmapAnnotation,
  rowAnnotation
)
importFrom(DESeq2,
  DESeq,
  DESeqDataSetFromMatrix,
  counts,
  estimateSizeFactors,
  results,
  resultsNames,
  rlog,
  varianceStabilizingTransformation,
  vst
)
importFrom(FactoMineR,
  HCPC,
  PCA,
  plot.PCA
)
importFrom(Mfuzz,
  fill.NA,
  filter.NA,
  filter.std,
  mestimate,
  mfuzz,
  mfuzz.plot2,
  standardise
)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,
  SummarizedExperiment,
  assay,
  assays,
  colData,
  colnames,
  rowData,
  rownames
)
importFrom(UpSetR,
  elements,
  upset
)
importFrom(factoextra,
  fviz_cluster,
  fviz_dend
)
importFrom(ggalluvial,
  stat_alluvium,
  stat_stratum
)
importFrom(ggplot2,
  aes,
  coord_flip,
  element_blank,
  element_rect,
  element_text,
  facet_grid,
  geom_area,
  geom_bar,
  geom_boxplot,
  geom_dotplot,
  geom_errorbar,
  geom_hline,
  geom_jitter,
  geom_line,
  geom_point,
  geom_segment,
  geom_violin,
  ggplot,
  ggtitle,
  guide_axis,
  guide_legend,
  guides,
  labs,
  position_dodge,
  position_jitter,
  position_nudge,
  rel,
  scale_color_manual,
  scale_fill_brewer,
  scale_fill_manual,
  scale_shape_manual,
  scale_size_manual,
  scale_x_continuous,
  scale_x_discrete,
  scale_y_continuous,
  theme,
  theme_bw,
  theme_classic,
  theme_minimal,
  unit,
  xlab,
  ylab,
  ylim
)
importFrom(ggplotify,as.ggplot)
importFrom(ggrepel,geom_label_repel)
importFrom(gprofiler2,
  gost,
  gostplot,
  publish_gosttable
)
importFrom(grDevices,
  dev.control,
  dev.cur,
  dev.off,
  dev.set,
  pdf,
  png,
  rainbow,
  recordPlot
)
importFrom(graphics,
  legend,
  lines,
  par,
  plot.new,
  text
)
importFrom(grid,gpar)
importFrom(plot3D,
  scatter3D,
  text3D
)
importFrom(plot3Drgl,plotrgl)
importFrom(reshape2,melt)
importFrom(rlang,.data)
importFrom(stats,
  aggregate,
  as.formula,
  cor,
  kmeans,
  model.matrix,
  reformulate,
  rexp,
  rnbinom,
  rnorm,
  runif,
  sd,
  var
)
importFrom(utils,write.table)
