EZ-to-Use Biplots

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Documentation for package ‘biplotEZ’ version 3.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

+.gg_biplot	'+' composes with ggplot components and returns a plain ggplot, so 'bp |> gg_biplot() + labs(...)' still works.
alpha.bags	Create alpha bags
AoD	Use the Analysis of Distance (AoD) method to construct the biplot
AoD.biplot	Calculate elements for the Analysis of Distance (AoD) biplot
axes	Format aesthetics for the biplot axes
biplot	First step to create a new biplot with 'biplotEZ'
biplotEZ	biplotEZ: EZ-to-Use Biplots
CA	Correspondence Analysis (CA) method
CA.biplot	CA biplot
CatPCA	Perform Categorical Principal Components Analysis (CatPCA)
CatPCA.biplot	Calculate elements for the CatPCA biplot
classification	Classification biplot method
classification.biplot	classification biplot
classify	Classify samples into classes
CLPs	Format aesthetics for the category level points
CLRs	Format aesthetics for the category level regions
CVA	Perform Canonical Variate Analysis (CVA)
CVA.biplot	Calculate elements for the CVA biplot
CVAlowdim	Construct additional dimensions when the dimension of the canonical space is smaller than the dimension of the biplot
density1D	Creates a kernel density in 1-dimension
density2D	Create a density in 2-dimensions
ellipses	Concentration ellipses (kappa-ellipses)
extended.matching.coefficient	Extended matching coefficient
fit.measures	Compute measures of fit for the biplot.
gg_biplot	ggplot2 plot method for biplotEZ objects
interpolate	Interpolate supplementary points and variables to add to the biplot
legend.type	Format the legend for the biplot
MCA	Multiple Correspondence Analysis (MCA) method
MCA.biplot	MCA biplot
means	Format aesthetics for the class or group means
newaxes	Format aesthetics for the supplementary (new) biplot axes
newsamples	Format aesthetics for the supplementary (new) biplot samples
nom.axes	Format aesthetics for the nominal biplot axes
ord.axes	Format aesthetics for the ordinal biplot axes
PCA	Perform Principal Components Analysis (PCA)
PCA.biplot	Calculate elements for the PCA biplot
PCO	Principal Coordinate Analysis (PCO) biplot method
PCO.biplot	PCO biplot
plot.biplot	Generic Plotting function of objects of class biplot
plot.gg_biplot	plot() on a gg_biplot re-displays the ggplot
prediction	Predict samples to display on the biplot
print.biplot	Generic print function for objects of class biplot
print.gg_biplot	Printing a gg_biplot displays the stored ggplot, then (as base print.biplot does) reports any predictions - here with the actual predicted values, which base leaves to be read off the axes.
reflect	Reflect the biplot about a chosen axis
regress	Regression biplot method
regress.biplot	Regression biplot
rotate	Rotate the biplot a chosen amount of degrees
samples	Format aesthetics for the biplot samples
sqrtManhattan	Computes the square root of the Manhattan distance An example of a Euclidean embeddable distance metric
summary.biplot	Generic summary function for objects of class biplot
ties	Applies primary or secondary approach to ties
translate_axes	Translate biplot axes