Package: crosshap
Type: Package
Title: Local Haplotype Clustering and Visualization
Version: 1.4.0
Authors@R: 
  c(person(given = "Jacob", 
           family = "Marsh", 
           role = c("aut", "cre"), 
           email = "jake.marsh@live.com.au",
           comment = c(ORCID = "0000-0003-3734-2023")),
    person(given = "Brady",
           family = "Johnston",
           role = "aut",
           email = "brady.johnston@me.com",
           comment = c(ORCID = "0000-0001-6301-2269")),
    person(given = "Jakob",
           family = "Petereit",
           role = "aut",
           email = "petinho86@gmail.com",
           comment = c(ORCID = "0000-0003-2159-0380"))
           )
Maintainer: Jacob Marsh <jake.marsh@live.com.au>
Description: A local haplotyping visualization toolbox to capture major
        patterns of co-inheritance between clusters of linked variants,
        whilst connecting findings to phenotypic and demographic traits
        across individuals. 'crosshap' enables users to explore and
        understand genomic variation across a trait-associated region.
        For an example of successful local haplotype analysis, see
        Marsh et al. (2022) <doi:10.1007/s00122-022-04045-8>.
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.2.3
Imports: cli, clustree, data.table, dbscan, dplyr, ggdist, ggplot2,
        ggpp, gridExtra, gtable, magrittr, patchwork, rlang, scales,
        tibble, tidyr
Suggests: covr, knitr, rmarkdown, testthat (>= 3.0.0), umap, vdiffr
Depends: R (>= 4.00)
URL: https://jacobimarsh.github.io/crosshap/
BugReports: https://github.com/jacobimarsh/crosshap/issues
License: MIT + file LICENSE
Config/testthat/edition: 3
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libglpk-dev
        libicu-dev libxml2-dev
Repository: https://jacobimarsh.r-universe.dev
Date/Publication: 2024-11-04 21:55:47 UTC
RemoteUrl: https://github.com/jacobimarsh/crosshap
RemoteRef: HEAD
RemoteSha: c31a82bb8d5bbaff0aecc5a66db0a3a7795e5f9d
NeedsCompilation: no
Packaged: 2026-10-10 16:17:00 UTC; root
Author: Jacob Marsh [aut, cre] (ORCID: <https://orcid.org/0000-0003-3734-2023>),
  Brady Johnston [aut] (ORCID: <https://orcid.org/0000-0001-6301-2269>),
  Jakob Petereit [aut] (ORCID: <https://orcid.org/0000-0003-2159-0380>)
Built: R 4.6.0; ; 2026-10-10 16:19:24 UTC; unix
