                       Changes in version 2.45.1                        

    o   Load test files from the MsDataHub package and remove dependency on the
	 msdata package.

    o   Catch error in spectrum ID parsing.

    o   Remove support for C++11 and C++14 from R-devel (see issue #315)

                       Changes in version 2.43.3                        

    o   Make electronBeamEnergy an optional header field.

                       Changes in version 2.43.2                        

    o   More fixes around NaN

                       Changes in version 2.43.1                        

    o   Update CV, adds multiple terms

                       Changes in version 2.41.4                        

    o   Use "rtime" and "intensity" as column names for the data.frame returned
	 by `chromatogram()`. Fixes #304.

                       Changes in version 2.41.3                        

    o   Fixed off-by-one indexing issue with index access for chromatogramHeader vs
	 chromatogram. Fixes #302. Thanks Nils Hoffmann !

                       Changes in version 2.41.2                        

    o   Report also electron beam energy (MS:1003410) for EAD data.

                       Changes in version 2.41.1                        

    o   Fix compilation error with stricter compiler checks

                       Changes in version 2.39.2                        

    o   Improve openMSfile and openIDfile manual page (contirbuted by
	 rdhale92, PR #299)

                       Changes in version 2.39.1                        

    o   Update CV translator, adds support for Astral

                       Changes in version 2.37.3                        

    o   Fix compilation on Windows/aarch64 (#290), thanks to Tomas Kalibera for the patch

                       Changes in version 2.37.2                        

    o   remove mentions of mzData in the DESCRIPTION, vignette and manual
	 files (support dropped in 2.29.3)

                       Changes in version 2.37.1                        

    o   fix compilation on centOS 7 / R-4.3.1 reported in #286

                       Changes in version 2.35.1                        

    o   fix compilation on Fedora 38 / R-4.3.0. Thanks to Christian Iseli! Closes #282

                       Changes in version 2.33.1                        

    o   fix: update to a new PSI-MS OBO for e.g. ZenoTOF CV term
	  Closes #278

                       Changes in version 2.29.4                        

    o   Re-apply fix for compile error on clang by Kurt Hornik, closes #263

    o   Remove text in DESCRIPTION hinting at the RAMP wrapper for mzData removed in 2.29.3

                       Changes in version 2.29.3                        

    o   Update to Proteowizard 3_0_21263

    o   Removed RAMP backend, dropping ability to read mzData

    o   header always returns a data.frame even for a single scan.

                       Changes in version 2.29.2                        

    o   Cleanup in build files

                       Changes in version 2.29.1                        

    o   fix: read full spectra data in get3DMap
	  Closes #269.

    o   Pwiz backend partially re-written to avoid segfault on macOS
	  (https://github.com/sneumann/xcms/issues/422).

                       Changes in version 2.27.6                        

    o   Only export certain spectra header parameters if their values are not NA.
	  Closes #266.

                       Changes in version 2.27.5                        

    o   `peaks` method for pwiz backend sets colnames on returned matrices.

                       Changes in version 2.27.2                        

    o   Remove support for the ramp backend.

                       Changes in version 2.27.1                        

    o   Add missing atomic_count_sync.hpp BH file (see PR #248 by vjcitn)

                       Changes in version 2.27.0                        

    o   New Bioc devel version

                       Changes in version 2.25.5                        

    o   Fix compile error on clang-11 reported (and fixed!) by Kurt Hornik, closes #244

                       Changes in version 2.25.4                        

    o   Add dependency "rmarkdown" to "suggests:"

                       Changes in version 2.25.3                        

    o   Ensure `header` for CDF returns columns with correct data type.

                       Changes in version 2.25.2                        

    o   Fix issue #238: ensure `header` call returns the same columns for all
	  backends.

                       Changes in version 2.25.1                        

    o   Bump version to trigger new build using latest Rcpp

                       Changes in version 2.25.0                        

    o   New Bioc devel version

                       Changes in version 2.21.2                        

    o   Update email address

                       Changes in version 2.21.1                        

    o   inject a new PSI-MS.obo controlled vocabulary
	  data-version: 4.1.30
	  date: 30:08:2019 16:10
	  saved-by: Gerhard Mayer

                       Changes in version 2.19.7                        

    o   Fix compile error on Windows + Mac (Thanks Mike!)

                       Changes in version 2.19.6                        

    o   header for the pwiz backend returns NA instead of 0 for not defined or
	  missing information <2019-09-24 Tue>.

    o   peaks for pwiz backend rewritten (small performance improvement)
	  <2019-09-26 Thu>.

                       Changes in version 2.19.5                        

    o   version bump to force build with latest Rcpp

                       Changes in version 2.19.4                        

    o   Add header columns scanWindowLowerLimit and scanWindowUpperLimit

                       Changes in version 2.19.3                        

    o   use ProtGenerics::tolerance generic <2019-08-16 Fri>

                       Changes in version 2.19.2                        

    o   Fix issue 190, compiles on clang-8.0

                       Changes in version 2.19.1                        

    o   Remove analyzer generics, now in ProtGenerics <2019-05-13 Mon>

                       Changes in version 2.17.4                        

    o   Update documentation, pointing to MSnbase rather than directly use
	  low-level classes. <2019-04-17 Wed>

                       Changes in version 2.17.3                        

    o   Extract isolation window from mzML files (issue #193): data.frame returned
	  by header gains columns "isolationWindowTargetMZ",
	  "isolationWindowLowerOffset", "isolationWindowUpperOffset".

                       Changes in version 2.17.2                        

    o   Fix bug #185: Error in R_nc4_open: Too many open files

                       Changes in version 2.15.5                        

    o   Fix bug #181

                       Changes in version 2.15.4                        

    o   Use new dependency ncdf4 for netCDF reading,
	  removes a lot of build hassles with old libnetcdf-dev linking.

    o   specParams returns a numeric scan.number.s.

                       Changes in version 2.15.3                        

    o   Adds MS-GF+ information such as Scan Time and a more reliable Scan
	  Number, contributed by FarmGeek4Life (see PR #174).

                       Changes in version 2.15.2                        

    o   Add header column ionMobilityDriftTime to report the corresponding CV
	  parameter (issue https://github.com/sneumann/mzR/issues/44).

    o   Ensure ion injection time is always reported in milliseconds.

    o   Replace BiocInstaller::biocLite with BiocManager::install (by Bioc
	  core)

                       Changes in version 2.15.1                        

    o   Fix typo (see https://github.com/sneumann/mzR/pull/162)

    o   New .hasSpectra and .hasChromatograms private function (see
	  https://github.com/lgatto/MSnbase/issues/343)

    o   Fix bug in score when more cvParams than expected are read - see
	  https://github.com/sneumann/mzR/issues/136 <2018-05-26 Sat>

                       Changes in version 2.15.0                        

    o   New Bioc devel version

                       Changes in version 2.13.8                        

    o   Document missing chrom argument for chromatogram(s)

                       Changes in version 2.13.7                        

    o   Add a missing header needed on gcc 6.2.0

                       Changes in version 2.13.6                        

    o   Add MS CV Term IDs for mzR, MSnbase and CAMERA (issue #151)

    o   Validate exported mzML files using xsd

                       Changes in version 2.13.5                        

    o   Fix https://github.com/sneumann/xcms/issues/261

    o   Fix endian.hpp for new c++ versions (see PR #149)

                       Changes in version 2.13.4                        

    o   Fix error (see issue #145)

                       Changes in version 2.13.3                        

    o   Link against Rhdf5lib, allows to read mz5 also on Windows

    o   Use Rhdf5lib 1.1.4 with c++ headers in /include

    o   fix BiocStyle related issue in Vignette on Windows

                       Changes in version 2.13.2                        

    o   Add chromatogramHeader method to read header information for chromatograms
	  from an mzML file.

                       Changes in version 2.13.1                        

    o   Read filter string from mzML files and add it to the data.frame returned by
	  the header function (see MSnbase issue #278).

    o   openMsFile automatically determine the backend to use based on file extension
	  and content.

                       Changes in version 2.11.11                       

    o   Fix problem in writeMSData: ensure precursor data is saved even if precursor
	  scan is not available (see MSnbase issue #245).

                       Changes in version 2.11.10                       

    o   Fix problem that can cause a SEGFAULT in writeMSData/copyWriteMSData when MS
	  data with spectra linking to missing precursor scans is saved (issue #129).

                       Changes in version 2.11.9                        

    o   Update peaks man page with details about spectrumId, acquisitionNum
	  and seqNum

                       Changes in version 2.11.8                        

    o   Add contributions guide with code of conduct.

    o   Update installation instructions for Mac.

    o   Report the spectrum ID in the header data.frame (column spectrumId).

    o   Fix in copyWriteMSData and writeMSData ensuring that MSn data is correctly

    o   Import pwiz r11174 fix for mzML without <componentList> (see #113).

                       Changes in version 2.11.7                        

    o   Nothing yet.

    o   Import fix by Brian Pratt (pwiz r11174) for mzML without <componentList>
	  Another way to fix #113

    o   Removing mz5 support from manual page, as currently unsupported.

                       Changes in version 2.11.6                        

    o   runInfo returns the run start time stamp from files providing this
	  information (mzML files).

                       Changes in version 2.11.5                        

    o   writeMSData and copyWriteMSData functions enabling to export MS data to
	  mzML or mzXML files.

                       Changes in version 2.11.4                        

    o   Use full TMT file pattern to select a single file

                       Changes in version 2.11.3                        

    o   Read ion injection time from mzML files and add it to the data.frame returned
	  by the header function.

                       Changes in version 2.11.2                        

    o   New getScanHeaderInfo and getAllScanHeaderInfo implementations for the pwiz
	  backend. Fixes issue #106 and issue #216 in MSnbase.

                       Changes in version 2.11.1                        

    o   Change default I/O backend from Ramp to pwiz.

                       Changes in version 2.11.0                        

    o   Bioc devel 3.6

                       Changes in version 2.10.0                        

    o   Bioc release 3.5

                       Changes in version 2.9.11                        

    o   Restore -fpermissive flag on windows

                       Changes in version 2.9.10                        

    o   Remove register keyword causing WARNING.

                        Changes in version 2.9.9                        

    o   Remove C++ references to cout/cerr/abort in pwiz code (see issue #89)

                        Changes in version 2.9.8                        

    o   Fix reading spectrum polarity from mzML using pwiz backend, closes #81

                        Changes in version 2.9.7                        

    o   Fix compilation on macOS

                        Changes in version 2.9.6                        

    o   Compile on macOS, but hdf5 path hard-coded

                        Changes in version 2.9.5                        

    o   Add missing boost/config/platform/macos.hpp <2017-01-25 Wed>

                        Changes in version 2.9.4                        

    o   New chromatogram accessors (for pwiz backend only) - see issue #73
	  <2017-01-23 Mon>

                        Changes in version 2.9.3                        

    o   bump to new Rcpp 0.12.8 version <2017-01-05 Thu>

                        Changes in version 2.9.2                        

    o   cleanup CFLAGS and LIBS for libnetcdf

    o   add file missing for oaxaca (Apple clang 3.5svn / 600.0.57)

                        Changes in version 2.9.1                        

    o   Delete RAMPAdapter pointer in pwiz backend (by jotsetung)
	  <2016-11-20 Sun>

    o   Use spectra in addition to peaks (see issue #15)
	  <2016-12-09 Fri>

    o   New pwiz (commit 946d23d75dc70a7a4913d8e05e3d59b9255f278e)

                        Changes in version 2.9.0                        

    o   Bioc devel 3.5

                        Changes in version 2.8.0                        

    o   Bioc release 3.4

                       Changes in version 2.7.13                        

    o   Fix waring on OSX (see issue #60)

                       Changes in version 2.7.12                        

    o   Fixing last warning on MacOS

                       Changes in version 2.7.11                        

    o   Fix failing example and test due to updated msdata::protemics data

                       Changes in version 2.7.10                        

    o   compiling and loading on Windows (hopefully)

                        Changes in version 2.7.9                        

    o   Updating Makevars.win

                        Changes in version 2.7.8                        

    o   compile pwiz when installing on Windows <2016-09-26 Mon>

                        Changes in version 2.7.7                        

    o   add netcdf static lib; potential incompatibility <2016-09-22 Thu>

                        Changes in version 2.7.6                        

    o   new isolationWindow accessor <2016-09-23 Fri>

                        Changes in version 2.7.5                        

    o   Apply Martin's free/delete patch - see
	  https://github.com/sneumann/mzR/issues/52 <2016-09-22 Thu>

                        Changes in version 2.7.4                        

    o   upgrade pwiz

    o   ensure file connections are cleaned and closed for pwiz.

                        Changes in version 2.7.1                        

    o   revert added compiler switch, and fixed boost code instead to get rid of warnings

                        Changes in version 2.5.8                        

    o   fix compiler Warning with clang on MacOS

                        Changes in version 2.5.7                        

    o   fix compilation with clang on MacOS

                        Changes in version 2.5.6                        

    o   fix compilation on new windows toolchain,
	  thanks to Kasper Daniel Hansen and Dan Tenenbaum

                        Changes in version 2.5.3                        

    o   new pwiz.version() function returning the pwiz backend version (KK)

                        Changes in version 2.5.2                        

    o   Provide pre-compiled windows libraries, again thanks to Qiang Kou (KK)

                        Changes in version 2.5.1                        

    o   Import Boost 1.59, thanks to Qiang Kou (KK)

                        Changes in version 2.3.3                        

    o   bump to new Rcpp 0.12.1 version <2015-09-29 Tue>

                        Changes in version 2.3.2                        

    o   Fix typo/bug in peaks,mzRpwiz <2015-07-31 Fri>

                        Changes in version 2.3.1                        

    o   update Rcpp version message to point to support site <2015-05-08 Fri>

                       Changes in version 2.1.12                        

    o   Remove superfluous BiocGenerics in Suggests [2015-03-01 Sun]

    o   Merged KK's Makefile to generate pwiz lib for windows [2015-03-01 Sun]

                       Changes in version 2.1.11                        

    o   Using generics from BiocGenerics (fileName, score) and ProtGenerics
	  [2015-02-28 Sat]

                       Changes in version 2.1.10                        

    o   Add instrumentInfo() and runInfo() for CDF backend (closes issue #22)

    o   Add precompiled libpwiz.a to reduce compile time on Windows (closes issue #21), thanks to KK

                        Changes in version 2.1.9                        

    o   Fix a compiler warning on OSX in the pep_XML serialiser

                        Changes in version 2.1.8                        

    o   Fix build on unix with netcdf.h in non-standard location

                        Changes in version 2.1.7                        

    o   Fix score segfault (see issue #18) and remove usage of ListBuilder.

    o   Update unit test to reflext new score code.

                        Changes in version 2.1.6                        

    o   adding an acquisitionNum column to psms (closes issue #17)
	  [2015-02-05 Thu]

                        Changes in version 2.1.5                        

    o   don't print '1' to the console when calling get3Dmap
	  [2015-01-29 Thu]

    o   add sequence length in psms output (closes issue #19)
	  [2015-02-04 Wed]

                        Changes in version 2.1.4                        

    o   documentation and vignette: mzIdentML version 1.1 support only
	  [2015-01-23 Fri]

                        Changes in version 2.1.1                        

    o   remove dependency on faahKO

                       Changes in version 1.99.4                        

    o   don't run pwiz example [2014-10-05 Sun]

                       Changes in version 1.99.3                        

    o   revising unit testing and using suggested convention as described
	  in Bioc unitTesting guidelines  [2014-10-02 Thu]

                       Changes in version 1.99.2                        

    o   bump to new Rcpp 0.11.3 version

                       Changes in version 1.99.1                        

    o   annoucning pwiz in vignette and that it will become the default
	  backend in Bioc 3.1 [2014-09-25 Thu]

    o   adding a dummy close for pwiz backend to avoid breaking code
	  that properly closes the previous ramp backend [2014-09-21 Sun]

    o   Not using ListBuilder to make psms data.frame and fix segfautls,
	  via KK [2014-09-27 Sat]

                       Changes in version 1.99.0                        

    o   New pwiz backend and support for mzid, contributed by Qiang Kou as
	  part of GSoC 2014.

    o   Using BiocStyle for vignette [2014-08-26 Tue]

                       Changes in version 1.11.11                       

    o   Remove superflouus library call in unitTests, should fix R CMD check on windows

                       Changes in version 1.11.10                       

    o   Remove redundant columns when returning several spectra

                       Changes in version 1.11.9                        

    o   Fix a bug in header() returning too few columns, introduced during 1.11.7

                       Changes in version 1.11.8                        

    o   Fix a windows compile problem by early importing Rcpp.h

                       Changes in version 1.11.7                        

    o   include polarity information into header() output

                       Changes in version 1.11.6                        

    o   removed one redundant parser which fixes inconsistencies
	  in the scan headers

                       Changes in version 1.11.5                        

    o   restored the polarity extraction

                       Changes in version 1.11.4                        

    o   restored the old ramp Interface

                       Changes in version 1.11.2                        

    o   adding missed src files [2014-05-28 Tue]

    o   merging master [2014-05-30 Fri]

                       Changes in version 1.11.1                        

    o   update pwiz/boost to support Maverick [2014-05-26 Mon]

                        Changes in version 1.9.8                        

    o   Pointing to the relevant wiki page in the Rcpp compiler/linker
	  warning [2014-04-03 Thu]

                        Changes in version 1.9.7                        

    o   modify to new biocViews to DESCRIPTION file (s.arora)

                        Changes in version 1.9.6                        

    o   import all of Rcpp to avoid warnings in reverse dependencies <2014-02-14 Fri>

                        Changes in version 1.9.3                        

    o   fix a string in ramp.cpp to enable compilation on clang-3.4

                        Changes in version 1.9.2                        

    o   version bump for Rcpp 0.10.6 <2013-10-30 Wed>

                        Changes in version 1.9.1                        

    o   moved vignettes to /vignettes <2013-10-17 Thu>

                        Changes in version 1.7.4                        

    o   version bump for Rcpp 0.10.5 <2013-10-02 Wed>

                        Changes in version 1.7.3                        

    o   Fix a compile error with the clang-3.3 compiler

                        Changes in version 1.7.2                        

    o   updated Rcpp number mismatch warning to include versions <2013-08-01 Thu>

                        Changes in version 1.7.1                        

    o   version bump for Rcpp 0.10.4

                        Changes in version 1.5.9                        

    o   version bump for Rcpp 0.10.3

                        Changes in version 1.5.8                        

    o   version bump for Rcpp 0.10.2

                        Changes in version 1.5.7                        

    o   only load Rcpp modules after checking for Rcpp
	  version conflict (DT)

                        Changes in version 1.5.6                        

    o   Explicitely call utils::packageVersion() to avoid warning (SN) <2012-12-15 Sat>

                        Changes in version 1.5.5                        

    o   ------------------------a
	o Added utils to Depends (SN) <2012-12-14 Fri>

                        Changes in version 1.5.4                        

    o   requiring Rcpp (>= 0.10.1) LG <2012-12-05 Wed>

    o   catching Rcpp build-time version (thanks to
	  Dan for help!) LG <2012-12-05 Wed>

    o   checking Rcpp installed vs building versions
	  and warn if these are different. LG <2012-12-05 Wed>

                        Changes in version 1.5.3                        

    o   bumping version to force rebuild due to Rcpp
	  change LG <2012-12-05 Wed>

    o   added NEWS file <2012-12-05 Wed>
