1.fasta                 Simulated SNP alignment data
AncCond                 Calculate the mean of a continuous character at
                        transitions in a binary charachter
CalcD                   Patterson's D-Statistic (ABBA-BABA Test)
CalcPopD                Population-Level Patterson's D-Statistic
FuzzyMatch              Fuzzy Name Matching Between Tree and Data
GetTipRates             Calculate Evolutionary Rates at Tree Tips
Mode                    Statistical Mode
ReOrderAlignment        Reorder Sequences in a FASTA Alignment
ResSel                  Residual Selection for Artificial Breeding
                        Experiments
SampleTrees             Sample Trees from Bayesian MCMC Output
SlidingWindow           Sliding Window Analysis
SuperMatrix             Build a Supermatrix from Multiple Sequence
                        Alignments
WinCalcD                Windowed Patterson's D-Statistic
countTrees              Count Tree Topologies in a Collection
evobiR-package          evobiR: Evolutionary Biology in R
fix.simmap              Fix Failed Branches in Stochastic Mapping
getNe                   Effective Population Size from Census Numbers
horn.beetle.csv         Gnatocerus cornutus measurements
hym.tree                Hymenoptera phylogenetic tree
make.simmap2            Enhanced Stochastic Character Mapping
mite.trait              Phenotype data for mites
pSAF                    Probability of Sex-Autosome Fusion
plot.phyloscaled        Plot a Rate-Scaled Phylogeny
scaleTreeRates          Analyze Rate Heterogeneity in Discrete
                        Character Evolution
trees.mite              10 phylogenetic trees for mites
trees.nex               100 simulated phylogenetic trees
