Evolutionary Biology in R

Documentation for package ‘evobiR’ version 2.2.1

evobiR-package	evobiR: Evolutionary Biology in R
1.fasta	Simulated SNP alignment data
3.fasta	Simulated SNP alignment data
AncCond	Calculate the mean of a continuous character at transitions in a binary charachter
CalcD	Patterson's D-Statistic (ABBA-BABA Test)
CalcPopD	Population-Level Patterson's D-Statistic
countTrees	Count Tree Topologies in a Collection
evobiR	evobiR: Evolutionary Biology in R
fix.simmap	Fix Failed Branches in Stochastic Mapping
FuzzyMatch	Fuzzy Name Matching Between Tree and Data
getNe	Effective Population Size from Census Numbers
GetTipRates	Calculate Evolutionary Rates at Tree Tips
horn.beetle.csv	Gnatocerus cornutus measurements
hym.tree	Hymenoptera phylogenetic tree
make.simmap2	Enhanced Stochastic Character Mapping
mite.trait	Phenotype data for mites
Mode	Statistical Mode
plot.phyloscaled	Plot a Rate-Scaled Phylogeny
pSAF	Probability of Sex-Autosome Fusion
ReOrderAlignment	Reorder Sequences in a FASTA Alignment
ResSel	Residual Selection for Artificial Breeding Experiments
SampleTrees	Sample Trees from Bayesian MCMC Output
scaleTreeRates	Analyze Rate Heterogeneity in Discrete Character Evolution
SlidingWindow	Sliding Window Analysis
SuperMatrix	Build a Supermatrix from Multiple Sequence Alignments
trees	10 phylogenetic trees for mites
trees.mite	10 phylogenetic trees for mites
trees.nex	100 simulated phylogenetic trees
WinCalcD	Windowed Patterson's D-Statistic