scMarkerAgent
Reference-free annotation · one dataset

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Marker-grounded cluster annotations with measured, LLM-validated, source-backed cell-type identity markers.

Reference-free output. No author annotation, purity, reference metric, or secondary label is read or displayed.
Cells
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after quality control
Clusters
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one reported annotation per cluster
Identity markers
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LLM-validated and DB-cited
Cluster summary Identity marker evidence All markers per cluster Significant markers per cluster Structured evidence

Figures

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Cluster explorer

Select a cluster.

Confidence is the high / medium / low judgement the annotating agent made from the supplied evidence. Every retrieved candidate, its independent review, and the three relative scores behind the retrieval order are kept in the structured evidence file. The Cell Ontology column is displayed as curated and is never used to decide, merge or rank an annotation; N/A means the curated free-text cell type carries no ontology id.