Package: iCAMP
Type: Package
Title: Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based
        Null Model Analysis
Version: 1.9.1
Authors@R: person(given = "Daliang", family = "Ning", role = c("aut", "cre"), email = "ningdaliang@ou.edu")
Imports:
        vegan,parallel,permute,ape,bigmemory,nortest,minpack.lm,Hmisc,stats4,DirichletReg,data.table
Depends: R (>= 3.5)
Description: To implement a general framework to quantitatively infer
        Community Assembly Mechanisms by Phylogenetic-bin-based null
        model analysis, abbreviated as 'iCAMP' (Ning et al 2020)
        <doi:10.1038/s41467-020-18560-z>. It can quantitatively assess
        the relative importance of different community assembly
        processes, such as selection, dispersal, and drift, for both
        communities and each phylogenetic group ('bin'). Each bin
        usually consists of different taxa from a family or an order.
        The package also provides functions to implement some other
        published methods, including neutral taxa percentage (Burns et
        al 2016) <doi:10.1038/ismej.2015.142> based on neutral theory
        model and quantifying assembly processes based on
        entire-community null models ('QPEN', Stegen et al 2013)
        <doi:10.1038/ismej.2013.93>. It also includes some handy
        functions, particularly for big datasets, such as phylogenetic
        and taxonomic null model analysis at both community and bin
        levels, between-taxa niche difference and phylogenetic distance
        calculation, phylogenetic signal test within phylogenetic
        groups, midpoint root of big trees, etc. Version 1.3.x mainly
        improved the function for 'QPEN' and added function
        'icamp.cate()' to summarize 'iCAMP' results for different
        categories of taxa (e.g. core versus rare taxa).
License: GPL-2
URL: https://github.com/DaliangNing/iCAMP1
NeedsCompilation: no
Packaged: 2026-09-24 10:20:53 UTC; root
Author: Daliang Ning [aut, cre]
Maintainer: Daliang Ning <ningdaliang@ou.edu>
Repository: https://cran.r-universe.dev
Date/Publication: 2026-09-24 10:13:12 UTC
RemoteUrl: https://github.com/cran/iCAMP
RemoteRef: HEAD
RemoteSha: 309c9c91e5bdac2c472d0c044b8c1d8abe7efab5
