To cite package ‘PathwaySpace’ in publications use:

  Tercan B, Apolonio VH, Chagas VS, Wong CK, Lee JA, et al. Protocol
  for assessing distances in pathway space for classifier feature sets
  from machine learning methods. STAR Protocols 6(2):103681, 2025. doi:
  10.1016/j.xpro.2025.103681

A BibTeX entry for LaTeX users is

  @Article{,
    author = {Bahar Tercan and Victor H Apolonio and Vinicius S Chagas and Christopher K Wong and Jordan A Lee and Christina Yau and Christopher C Benz and Joshua M Stuart and Brian J Karlberg and Kyle Ellrott and Jasleen K Grewal and Steven JM Jones and The Cancer Genome Atlas Analysis Network and Jean C Zenklusen and A. Gordon Robertson and Peter W Laird and Andrew D Cherniack and Mauro AA Castro},
    title = {Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods},
    journal = {STAR Protocols},
    year = {2025},
    volume = {6},
    number = {2},
    pages = {103681},
    doi = {10.1016/j.xpro.2025.103681},
  }

  Ellrott K, Wong CK, Yau C, Castro MAA, Lee JA, Karlberg BJ, Grewal
  JK, Lagani V, Tercan B et al. Classification of non-TCGA cancer
  samples to TCGA molecular subtypes using compact feature sets. Cancer
  Cell 43(2):195-212.e11, 2025. doi: 10.1016/j.ccell.2024.12.002

A BibTeX entry for LaTeX users is

  @Article{,
    author = {Kyle Ellrott and Christopher K Wong and Christina Yau and Mauro AA Castro and Jordan A Lee and Brian J Karlberg and Jasleen K Grewal and Vincenzo Lagani and Bahar Tercan and et al.},
    title = {Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets},
    journal = {Cancer Cell},
    year = {2025},
    volume = {43},
    number = {1},
    pages = {1},
    doi = {10.1016/j.ccell.2024.12.002},
  }
