Aadditional Functions and Distributions For Bayesian Inference Of Jolly-Seber Models For The NIMBLE Package

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Documentation for package ‘nimbleJSextras’ version 0.1.9002

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collapse_ch Collapse all capture histories to only unique histories
dhmm_binom Hidden Markov Model distribution for binomial and Poisson capture histories
dhmm_js Hidden Markov Model distribution for binomial and Poisson capture histories
dhmm_pois Hidden Markov Model distribution for binomial and Poisson capture histories
dJS Jolly-Seber distributions For nimble models
dJS_binom Jolly-Seber distributions For nimble models
dJS_ms Jolly-Seber distributions For nimble models
dJS_pois Jolly-Seber distributions For nimble models
pstar_binom Jolly-Seber distributions For nimble models
pstar_ms Jolly-Seber distributions For nimble models
pstar_pois Jolly-Seber distributions For nimble models
rhmm_binom Hidden Markov Model distribution for binomial and Poisson capture histories
rhmm_pois Hidden Markov Model distribution for binomial and Poisson capture histories
rJS_binom Jolly-Seber distributions For nimble models
rJS_ms Jolly-Seber distributions For nimble models
rJS_pois Jolly-Seber distributions For nimble models
sample_det Sample states for undetected (not captured) individuals
sample_det_binom Sample states for undetected (not captured) individuals
sample_det_ms Sample states for undetected (not captured) individuals
sample_det_pois Sample states for undetected (not captured) individuals
sample_undet Sample states for undetected (not captured) individuals
sample_undet_binom Sample states for undetected (not captured) individuals
sample_undet_ms Sample states for undetected (not captured) individuals
sample_undet_pois Sample states for undetected (not captured) individuals
simulate_js Simulate Traditional Jolly-Seber Capture-Recapture Data
simulate_multistate_js Simulate Multistate Jolly-Seber Capture-Recapture Data
sim_js_list Simulation output object