STRprofilerR is an R port of the STRprofiler Python package. Please cite the STRprofiler paper. If you use the CLASTR functionality, please also cite Cellosaurus and CLASTR.

Andrews J, Lloyd M, Neuhauser S, Bundy M, Jocoy E, Airhart S, Bult C, Evrard Y, Chuang J, Baker S (2024). “STRprofiler: efficient comparisons of short tandem repeat profiles for biomedical model authentication.” Bioinformatics. doi:10.1093/bioinformatics/btae713.

Bairoch A (2018). “The Cellosaurus, a cell-line knowledge resource.” Journal of Biomolecular Techniques, 29(2), 25–38. doi:10.7171/jbt.18-2902-002.

Robin T, Capes-Davis A, Bairoch A (2020). “CLASTR: The Cellosaurus STR similarity search tool - A precious help for cell line authentication.” International Journal of Cancer, 146(5), 1299–1306. doi:10.1002/ijc.32639.

Corresponding BibTeX entries:

  @Article{,
    title = {STRprofiler: efficient comparisons of short tandem repeat
      profiles for biomedical model authentication},
    author = {Jared M Andrews and Michael W Lloyd and Steven B
      Neuhauser and Margaret Bundy and Emily L Jocoy and Susan D
      Airhart and Carol J Bult and Yvonne A Evrard and Jeffrey H Chuang
      and Suzanne Baker},
    journal = {Bioinformatics},
    year = {2024},
    doi = {10.1093/bioinformatics/btae713},
  }

  @Article{,
    title = {The Cellosaurus, a cell-line knowledge resource},
    author = {Amos Bairoch},
    journal = {Journal of Biomolecular Techniques},
    volume = {29},
    number = {2},
    pages = {25--38},
    year = {2018},
    doi = {10.7171/jbt.18-2902-002},
  }

  @Article{,
    title = {CLASTR: The Cellosaurus STR similarity search tool - A
      precious help for cell line authentication},
    author = {Thomas Robin and Amanda Capes-Davis and Amos Bairoch},
    journal = {International Journal of Cancer},
    volume = {146},
    number = {5},
    pages = {1299--1306},
    year = {2020},
    doi = {10.1002/ijc.32639},
  }