Package: falconx
Version: 0.2
Date: 2017-02-16
Title: Finding Allele-Specific Copy Number in Whole-Exome Sequencing
        Data
Author: Hao Chen and Nancy R. Zhang
Maintainer: Hao Chen <hxchen@ucdavis.edu>
Depends: R (>= 3.0.1)
Description: This is a method for Allele-specific DNA Copy Number
        profiling for whole-Exome sequencing data.  Given the
        allele-specific coverage and site biases at the variant loci,
        this program segments the genome into regions of homogeneous
        allele-specific copy number.  It requires, as input, the read
        counts for each variant allele in a pair of case and control
        samples, as well as the site biases. For detection of somatic
        mutations, the case and control samples can be the tumor and
        normal sample from the same individual.  The implemented method
        is based on the paper: Chen, H., Jiang, Y., Maxwell, K.,
        Nathanson, K. and Zhang, N. (under review). Allele-specific
        copy number estimation by whole Exome sequencing.
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2026-10-12 10:53:59 UTC; root
Repository: https://cran.r-universe.dev
Date/Publication: 2017-02-24 22:43:44 UTC
RemoteUrl: https://github.com/cran/falconx
RemoteRef: HEAD
RemoteSha: efa5f9d657c93b8b27fb289211585b94c32a59b5
Built: R 4.6.0; wasm32-unknown-emscripten; 2026-10-12 10:55:36 UTC; unix
