Heritability Estimation from Linear Mixed Models

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Documentation for package ‘heritable’ version 0.2.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

bootstrap_asreml	Parametric bootstrap for an asreml model.
confint.heritable	Bootstrap confidence interval for heritability
get_fixed_fit_asreml	Fixed-effects-only fitted values from an asreml model
H2	Calculate broad-sense or narrow sense heritability from model object
h2	Calculate broad-sense or narrow sense heritability from model object
H2,	Calculate broad-sense or narrow sense heritability from model object
H2_Cullis	Calculate Cullis' heritability from model object
h2_Cullis	Calculate Cullis' heritability from model object
H2_Cullis,	Calculate Cullis' heritability from model object
H2_Cullis_parameters	Calculate Cullis heritability using variance parameters
H2_Delta	Calculate average heritability of differences between genotypes from model object
h2_Delta	Calculate average heritability of differences between genotypes from model object
H2_Delta,	Calculate average heritability of differences between genotypes from model object
H2_Delta_by_genotype	Calculate heritability of differences for a given genotype from model object
h2_Delta_by_genotype	Calculate heritability of differences for a given genotype from model object
H2_Delta_by_genotype,	Calculate heritability of differences for a given genotype from model object
H2_Delta_pairwise	Calculate pairwise heritability of differences between genotypes from model object
h2_Delta_pairwise	Calculate pairwise heritability of differences between genotypes from model object
H2_Delta_pairwise,	Calculate pairwise heritability of differences between genotypes from model object
H2_Delta_parameters	Calculate heritability of pairwise differences using variance parameters
H2_Oakey	Calculate Oakey's heritability from model object
h2_Oakey	Calculate Oakey's heritability from model object
H2_Oakey,	Calculate Oakey's heritability from model object
H2_Oakey_parameters	Calculate Oakey's heritability using variance parameters
H2_Piepho	Calculate Piepho's heritability from model object Compute Piepho's heritability using variance differences between genotype BLUEs
h2_Piepho	Calculate Piepho's heritability from model object Compute Piepho's heritability using variance differences between genotype BLUEs
H2_Piepho,	Calculate Piepho's heritability from model object Compute Piepho's heritability using variance differences between genotype BLUEs
H2_Piepho_parameters	Calculate Piepho's heritability using variance parameters
H2_Reliability	Calculate reliability from model object
h2_Reliability	Calculate reliability from model object
H2_Reliability_by_genotype	Calculate reliability from model object
h2_Reliability_by_genotype	Calculate reliability from model object
H2_Reliability_parameters	Calculate reliability using variance parameters
H2_Standard	Calculate standard heritability from model object
h2_Standard	Calculate standard heritability from model object
H2_Standard,	Calculate standard heritability from model object
H2_Standard_parameters	Calculate Standard heritability using variance parameters
lettuce_GRM	Molecular marker data and genomic relatedness matrix of 89 lettuce varieties
lettuce_markers	Molecular marker data and genomic relatedness matrix of 89 lettuce varieties
lettuce_phenotypes	Phenotypic data of 89 lettuce varieties
lizard_GRM	Molecular markers data and genomic relatedness matrix of Australian lizards
lizard_markers	Molecular markers data and genomic relatedness matrix of Australian lizards
lizard_phenotypes	Phenotypic data of Australian lizards
var_comp	Extract variance components