# Generated by roxygen2: do not edit by hand

S3method(plot,PhiSpaceClustering)
S3method(predict,PhiSpaceModel)
S3method(print,PhiSpaceClustering)
S3method(print,PhiSpaceModel)
S3method(summary,PhiSpaceClustering)
export(CLRnorm)
export(KeepCommonGenes)
export(PhiSpace)
export(PhiSpaceR_1ref)
export(RankTransf)
export(Score2Prob)
export(VizSpatial)
export(cellTypeCorMat)
export(clusterPhiSpace)
export(codeY)
export(codeY_vec)
export(computeUMAP)
export(doubleCent)
export(findNiches)
export(getLabels)
export(getPC)
export(logNormTransf)
export(logTransf)
export(mvr)
export(normPhiScores)
export(piScore)
export(plotPhiSpaceHeatMap)
export(pseudoBulk)
export(rankFeatures)
export(reNameCols)
export(saveCellTypeMaps)
export(scoreCells)
export(scranTransf)
export(selectFeat)
export(spatialSampler)
export(spatialSmoother)
export(subsample)
export(trainPhiSpace)
export(translateLabel)
export(tunePhiSpace)
export(zeroFeatQC)
exportMethods(cellTypeCorMat)
import(Matrix)
import(SingleCellExperiment)
import(SpatialExperiment)
import(SummarizedExperiment)
import(ggplot2)
import(methods)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(magrittr,"%>%")
importFrom(stats,dist)
importFrom(stats,kmeans)
importFrom(stats,predict)
importFrom(stats,sd)
importFrom(utils,modifyList)
