NEWS

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MsBackendMassIVE 0.99

Changes in 0.99.3

• Fix bug when files have same filenames in different subfolder #30.
• Fix bug overwrite BiocFileCache metatable.
• Add fileName parameter to backendInitialize().

Changes in 0.99.2

• Fix bug caching files with same filename. Append MassIVE id to filename.
• Adapt hard-coded timeout for requests to avoid failure on slow connections. Issue #26
• Dealing with corrupted files due to interrupted download. Issue #28
• Ensures that files are always returned in the same order.
• Update GNPS2 test for Metabolights USI.

Changes in 0.99.1

• Drop stringr dependency.
• Fix vignette visualization.

Changes in 0.99.0

• Fix bug in ftp url encoding.
• Improve performance massive_ftp_path().
• Add massive_number_files().
• Fix bug handling duplicates files.
• Update from httr to httr2.
• Update Curl query to address the new policies of MassIVE based on FTP SSL.
• Update examples and tests

Changes in 0.1.5

• Add examples for MassIVE and GNPS2 utility functions to the vignette.

Changes in 0.1.4

• Add gnps2_usi_download_link() to get download link for a USI

Changes in 0.1.3

• Separate GNPS2 function from massive_list_files()
• Remove repetitive error

Changes in 0.1.2

• Add massive_param_file() to parse params.xml file.
• Add additional test for massive_list_files() and .massive_data_files()

Changes in 0.1.1

• Add package vignette.
• Replace interactive readline() with overwrite parameter in massive_download_file().
• Replace cat() with message() in massive_download_file().

Changes in 0.1.0

• Add MassIVE utilities.
• Add functionality to download and cache MS data files from MassIVE.
• Add unit tests.