                       Changes in version 1.15.2                        

  - Fix Bioconductor devel build failure from Biostrings >= 2.81.3
    (Bioconductor 3.24). Adapt to Biostrings >= 2.81.3
    (Bioconductor 3.24), where DNAMultipleAlignment,
    AAMultipleAlignment, and readDNAMultipleAlignment moved to the new
    MultipleAlignment package. Import from MultipleAlignment, declare
    the S4 class via importClassesFrom(), add explicit
    DNAMultipleAlignment methods, and regenerate bundled MSA datasets.
    This fixes lazy-loading and example failures on the Bioconductor
    build system. (Not applicable to Bioconductor 3.23 /
    Biostrings 2.80.1.)

                       Changes in version 1.15.1                        

  - Update math documentation notation and BiocCheck vignette fixes

                       Changes in version 1.15.0                        

  - Fix a bug in the internal function 'weighted_manhattan' (used by
    'codon_dist', 'codon_dist_matrix', and 'aminoacid_dist') where, for
    \eqn{group = "Z4"}, the second coordinate weight ('w[2]') was
    silently omitted and 'w[3]' was applied twice instead, contradicting
    the documented weighted Manhattan distance formula. This changes the
    numeric distances returned for \emph{group = "Z4"} (the default).
    The bundled 'cdm_z64' dataset was regenerated accordingly.

  - Documentation updated

                        Changes in version 1.8.1                        

  - Add new a new function: 'automorphism_prob', which applies a
    Dirichlet-Multinomial Modelling (in a Bayesian framework) to compute
    the posterior probability of each type of mutational event.

                        Changes in version 1.5.1                        

  - Introducing new functions for DNA and aminoacid sequence
    representations with physicochemical properties of DNA and
    aminoacids, which would be useful for further downstream statistical
    analysis in R.

                        Changes in version 1.0.2                        

  - Fix error of parallel computation on Windows (12/08/2022)

                        Changes in version 1.0.1                        

  - Expanding analyses by including aminoacid similarity based on codon
    distances. Three new functions are added: codon_dist,
    codon_dist_matrix, and aminoacid_dist. See a tutorial applying these
    functions at https://is.gd/oYLDK4.

                        Changes in version 1.0.0                        

  - Release in Bioconductor (version 3.16).
    https://doi.org/doi:10.18129/B9.bioc.GenomAutomorphism

                       Changes in version 0.99.4                        

  - Expanding analyses by including amino acid similarity and
    statistical protein contact potentials matrices from from Amino Acid
    Index Database https://www.genome.jp/aaindex/.
  - Improving documentation.
  - Fixed a bug which introduced a change of protein coding frameshift.

                       Changes in version 0.99.3                        

  - Documentation improvement.
  - Package accepted on Bioconductor (07/18/22)

                       Changes in version 0.99.2                        

  - Updating several details after the review process in Bioconductor
    (https://github.com/Bioconductor/Contributions/issues/2678)

                       Changes in version 0.99.0                        

  - Available at https://github.com/genomaths/GenomAutomorphism
  - Release: February 28, 2022
      - Initial development.
