# Generated by roxygen2: do not edit by hand

S3method(cor.test_trimmed_v0,default)
S3method(cor.test_trimmed_v0,formula)
export(add_mirrors)
export(annotate_clones)
export(build_clone_counts)
export(build_clone_key)
export(build_on_BULK_v2)
export(clone_mean_expression)
export(compare_performance)
export(cor.test_trimmed_v0)
export(each_patient_pseudo_bulk)
export(export_plot_cairo)
export(fdrcorr)
export(feature_ranking_bulk)
export(get_cellLine_list)
export(get_depmap)
export(get_mirrors)
export(get_performance)
export(get_response_matrix)
export(get_significant_models)
export(hypergeometric_test_for_twolists)
export(list_mirrors)
export(load_depmap)
export(load_model)
export(parse_clone_keys)
export(plot_clone_distribution)
export(plot_clone_umap)
export(plot_clone_viability)
export(plot_model_performance)
export(plot_model_roc)
export(plot_patient_response_panel)
export(plot_response_boxplot)
export(plot_roc_curve)
export(plot_seurat_clustering)
export(plot_tsne_biomarker_viability)
export(plot_tsne_response)
export(predict_drugs)
export(predict_patients)
export(prepare_data)
export(range01)
export(rank_normalization_mat)
export(reset_mirrors)
export(run_parallel_feature_ranking_bulk)
export(run_perception_app)
export(train_models)
export(zscore_viability)
importFrom(caret,predict.train)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_equal)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_colourbar)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,rel)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_colour_gradient2)
importFrom(ggplot2,scale_colour_gradientn)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_void)
importFrom(ggplot2,unit)
importFrom(ggplot2,vars)
importFrom(glmnet,glmnet)
importFrom(pROC,auc)
importFrom(pROC,ggroc)
importFrom(pROC,roc)
importFrom(pROC,smooth)
importFrom(randomForest,randomForest)
importFrom(rlang,.data)
importFrom(stats,aggregate)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,reformulate)
importFrom(stats,setNames)
importFrom(stats,t.test)
importFrom(stats,wilcox.test)
importFrom(utils,combn)
importFrom(utils,download.file)
importFrom(utils,head)
