benchmarkParameters     Benchmark Complex Refinement Parameters
buildComplexNetwork     Build a Complex-Complex Interaction Network
computeMapTopology      Compute Network Topology and Layout Coordinates
createComplexMap        Create a Complete Complex Map Object
demoComplexes           Example Protein Complex List
evaluateComplexes       Evaluate Predicted Protein Complexes Against a
                        Reference Set
explore                 Explore a ComplexMap Object Interactively
exportNetwork           Export a ComplexMap Network for External Tools
generateNodeAttributes
                        Generate Node Attributes for a Complex Network
getEdgeTable            Get the Edge Table from a ComplexMap Object
getExampleGmt           Get the Path to an Example GMT File
getGmtFromFile          Read a GMT File from a Local Path
getGoGmt                Fetch Gene Ontology (GO) Gene Sets
getMsigdbGmt            Fetch Gene Sets from MSigDB
getNodeTable            Get the Node Table from a ComplexMap Object
getReactomeGmt          Fetch Reactome Pathway Gene Sets
print.ComplexMap        Print Method for a ComplexMap Object
pruneNetwork            Prune Network Edges Before Cytoscape Export
qcComplexList           Perform Quality Control on a List of Protein
                        Complexes
queryMap                Query a ComplexMap Object
referenceComplexes      Reference Protein Complex Set (CORUM)
refineComplexList       Refine a List of Protein Complexes by Size and
                        Redundancy
runComplexEnrichment    Run Gene Set Enrichment Analysis on a List of
                        Complexes
runComplexMapApp        Run the ComplexMap Interactive Explorer
scaleLayoutForCytoscape
                        Scale Layout Coordinates for Cytoscape.js
toCytoscapeJSON         Export a ComplexMap Object to Cytoscape.js JSON
