| dowser::Building-Time-Trees-Vignette | Build Time Trees Using TyCHE and BEAST | HTML | source | R code | |
| dowser::Building-Trees-Vignette | Build Lineage Trees | HTML | source | R code | |
| dowser::Discrete-Trait-Vignette | Discrete Trait Analysis | HTML | source | R code | |
| dowser::Germlines-Vignette | Reconstruct Clonal Germlines | HTML | source | R code | |
| dowser::Input-Output-Vignette | Input and Output | HTML | source | R code | |
| dowser::Measurable-Evolution | Measurable evolution | HTML | source | R code | |
| dowser::NonB-Cell-Data | Using data from non-B cells | HTML | source | R code | |
| dowser::Plotting-Trees-Vignette | Plotting Lineage Trees | HTML | source | R code | |
| dowser::Quickstart-Vignette | Quickstart | HTML | source | R code | |
| dowser::Removing-Problematic-Sequences-Vignette | Removing problematic sequences | source | R code | ||
| dowser::Resolve-Light-Chains-Vignette | Building trees with paired heavy and light chain data | HTML | source | R code | |
| dowser::Sequences-Vignette | Reconstruct Intermediate Sequences | HTML | source | R code |