ancRECON	ancRECON
ancRECON_slice	ancRECON_slice
ComputeCI	ComputeCI
compute_joint_ci	compute_joint_ci
ConvertPhangornReconstructions	ConvertPhangornReconstructions
corDISC	corDISC
corHMM	corHMM
corHMMDredge	corHMMDredge
corHMMDredgeBase	corHMMDredgeBase
dent_likelihood	dent_likelihood
dent_propose	dent_propose
dent_walk	dent_walk
dev.raydisc	rayDISC
dropStateMatPars	getFullMat
equateStateMatPars	getFullMat
fitCorrelationTest	fitCorrelationTest
getCVTable	getCVTable
getFullMat	getFullMat
getModelTable	getModelTable
getRateCatMat	getFullMat
getStateMat4Dat	getRateMat4Dat
get_batch_profile_lik	get_batch_profile_lik
kFoldCrossValidation	kFoldCrossValidation
makeSimmap	makeSimmap
node_importance_by_cluster	node_importance_by_cluster
phylo_aware_dist_fast	phylo_aware_dist_fast
phylo_aware_dist_local	phylo_aware_dist_local
plot.dentist	plot.dentist
plotDredgeTrace	plotDredgeTrace
plotMKmodel	plotMKmodel
plotRECON	plotRECON
plot_batch_profile_lik	plot_batch_profile_lik
plot_clustered_phylo	plot_clustered_phylo
plot_raw_recon	plot_raw_recon
plot_stacked_densities	plot_stacked_densities
plot_transition_summary	plot_transition_summary
primates	primates
primates.paint	primates
print.dentist	print.dentist
rayDISC	rayDISC
rayDISC.example	primates
simMarkov	simMarkov
summarize_single_simmap	summarize_simmaps
summarize_transition_stats	summarize_simmaps
summary.dentist	summary.dentist
tipHomology	tipHomology
