To cite the decontX package, please cite the method you used.

If you used decontX() for single-cell RNA-seq data, cite:

  Yang S, Corbett S, Koga Y, Wang Z, Johnson W, Yajima M, Campbell J
  (2020). “Decontamination of ambient RNA in single-cell RNA-seq with
  DecontX.” _Genome Biology_, *21*(1), 57.
  doi:10.1186/s13059-020-1950-6
  <https://doi.org/10.1186/s13059-020-1950-6>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Decontamination of ambient RNA in single-cell RNA-seq with DecontX},
    author = {Shiyi Yang and Sean E. Corbett and Yusuke Koga and Zhe Wang and W. Evan Johnson and Masanao Yajima and Joshua D. Campbell},
    journal = {Genome Biology},
    year = {2020},
    volume = {21},
    number = {1},
    pages = {57},
    doi = {10.1186/s13059-020-1950-6},
  }

If you used decontPro() for single-cell protein expression data, cite:

  Yin Y, Yajima M, Campbell J (2024). “Characterization and
  decontamination of background noise in droplet-based single-cell
  protein expression data with DecontPro.” _Nucleic Acids Research_,
  *52*(1), e4. doi:10.1093/nar/gkad1032
  <https://doi.org/10.1093/nar/gkad1032>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Characterization and decontamination of background noise in droplet-based single-cell protein expression data with DecontPro},
    author = {Yuan Yin and Masanao Yajima and Joshua D. Campbell},
    journal = {Nucleic Acids Research},
    year = {2024},
    volume = {52},
    number = {1},
    pages = {e4},
    doi = {10.1093/nar/gkad1032},
  }
