GPlinksR

GPlinksR builds gene-peak networks for multi-omics integration by combining enhancer-, promoter-, and proximity-based (closest-gene) mapping.
It uses public enhancer-gene link data from PANTHER / PEREGRINE (AnnoQ).

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Installation

Install GPlinksR with BiocManager:

if (!requireNamespace("BiocManager", quietly = TRUE)) {
    install.packages("BiocManager")
}

BiocManager::install("GPlinksR")

Until the package is available from Bioconductor, install the development version from GitHub:

if (!requireNamespace("BiocManager", quietly = TRUE)) {
    install.packages("BiocManager")
}

BiocManager::install("Corawang123/GPlinksR")