Quantitative Analysis of Gray Leaf Spot Colonies from Plate Images

Documentation for package ‘grayleafspotr’ version 0.99.14

as_grayleafspot_growth_data	Coerce a grayleafspot run object to a tidy data frame
example_grayleafspot_results	Load the built-in example grayleafspot run
grayleafspot_analyze	Analyze plate images with the SmallUNet pipeline
grayleafspot_download_model	Download the SmallUNet segmentation model
grayleafspot_python_available	Check whether the Python ML dependencies are available
grayleafspot_python_executable	Return the Python executable used by the grayleafspot pipeline
grayleafspot_run	Run the gray leaf spot pipeline — simplified entry point
plot_colony_expansion	Plot colony expansion over time
plot_feature_heatmap	Pearson correlation heatmap of numeric morphology features
plot_grayleafspot_overlay	Overlay detected regions of interest on a plate image
plot_growth_roughness	Plot relative growth rate and edge roughness
plot_radial_growth_area	Plot radial growth rate and colony area by plate over time
plot_radial_profile	Plot the radial intensity profile from the first image in a run
plot_shape_vs_stress	Scatter plot of colony shape vs crack stress
plot_stress_remodeling	Plot crack coverage and crack count over time
plot_texture_organization	Plot texture entropy and center-to-edge intensity delta over time
read_grayleafspot_results	Read a saved grayleafspot run from disk
write_grayleafspot_results	Write grayleafspot results to disk