as_granges              Region or block calls as a GRanges
call_blocks             Call blocks from the state posterior
call_regions            Turn a denoised effect track into regions
comethylation_clusters
                        Group adjacent probes that co-vary within
                        subject
distance_penalty        Distance-decaying penalty for the denoising
                        step
ewas_blocks             Call long-range methylation blocks from a
                        methylation object
ewas_regions            Call differentially methylated regions from a
                        methylation object
fit_block_hsmm          Distance-aware three-state hidden semi-Markov
                        block model
fit_within              Within-subject (fixed-effects) probe-level fit
fit_within_se           Fit the within-subject exposure effect on a
                        SummarizedExperiment
moderate_variance       Empirical-Bayes shrinkage of per-probe residual
                        variance
naive_permutation       Permute the exposure across all samples
probe_coords            Probe chromosome and position from an annotated
                        object
read_f64                Read a raw float64 matrix written by the
                        pipeline
sort_probes             Order an object by probe position
stability_selection     Subject-level stability selection
tv_denoise              Total-variation denoising of a probe-level
                        effect track
within_subject_permutation
                        Permute the exposure within subject
